Tuesday Tip #40: Build your DataFrame from multiple files 🏗️


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👉 Tip #40: Build a DataFrame from multiple files

Let’s say that your dataset is spread across multiple files, but you want to read the dataset into a single pandas DataFrame.

For example, I have a tiny dataset of stock market data in which each CSV file only includes a single day. Here’s the first day:

Here’s the second day:

And here’s the third day:

You could read each CSV file into its own DataFrame, combine them together, and then delete the original DataFrames, but that would be memory inefficient and require a lot of code.

A better solution is to use Python’s built-in glob module:

You can pass a pattern to the glob() function, including wildcard characters, and it will return a list of all files that match that pattern.

In this case, glob() is looking in the “data” subdirectory for all CSV files that start with the word “stocks” followed by one or more characters:

glob returns filenames in an arbitrary order, which is why we sorted the list using Python’s built-in sorted() function.

We can then use a generator expression to read each of the files using read_csv() and pass the results to the concat() function, which will concatenate the rows into a single DataFrame:

Unfortunately, there are now duplicate values in the index. To avoid that, we can tell the concat() function to ignore the index and instead use the default integer index:

Pretty cool, right?

Need to build a DataFrame column-wise instead? Use the same code as above, except pass axis='columns' to concat()!


👋 Until next time

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See you next Tuesday!

- Kevin

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